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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.25.1

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation.

        Report generated on 2025-06-27, 01:58 CEST based on data in: /gpfs1/work/hartmaca/calixto/work/b7/87b9009c24442875156195ba732a56


        Because this report contains a lot of samples, you may need to click 'Show plot' to see some graphs.

        General Statistics

        Showing 702 samples.

        Created with MultiQC

        Sample status checks

        Reports on sample strandedness status, and any failures in trimming or mapping.

        Strandedness Checks

        Showing 0/468 rows and 7/7 columns.
        SampleStatusStrand inference methodProvided strandednessInferred strandednessSense (%)Antisense (%)Unstranded (%)
        ERX1946678
        pass
        RSeQC
        auto
        unstranded
        49.2
        49.0
        1.8
        ERX1946678
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946679
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.6
        2.0
        ERX1946679
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946680
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.7
        1.8
        ERX1946680
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946681
        pass
        RSeQC
        auto
        unstranded
        50.1
        48.3
        1.7
        ERX1946681
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946682
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.5
        1.7
        ERX1946682
        pass
        Salmon
        auto
        unstranded
        50.7
        49.3
        0.0
        ERX1946683
        pass
        RSeQC
        auto
        unstranded
        50.0
        48.5
        1.4
        ERX1946683
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946684
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.5
        2.0
        ERX1946684
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946685
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.6
        1.7
        ERX1946685
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946686
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.9
        1.6
        ERX1946686
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946687
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.9
        1.4
        ERX1946687
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946688
        pass
        RSeQC
        auto
        unstranded
        49.7
        49.0
        1.3
        ERX1946688
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946689
        pass
        RSeQC
        auto
        unstranded
        50.0
        48.9
        1.1
        ERX1946689
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946690
        pass
        RSeQC
        auto
        unstranded
        49.9
        49.2
        0.9
        ERX1946690
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946691
        pass
        RSeQC
        auto
        unstranded
        50.0
        49.0
        1.0
        ERX1946691
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946692
        pass
        RSeQC
        auto
        unstranded
        49.2
        49.7
        1.0
        ERX1946692
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946693
        pass
        RSeQC
        auto
        unstranded
        49.8
        49.1
        1.1
        ERX1946693
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946694
        pass
        RSeQC
        auto
        unstranded
        49.4
        49.4
        1.2
        ERX1946694
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946695
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.1
        1.6
        ERX1946695
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946696
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.9
        1.3
        ERX1946696
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946697
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.9
        1.4
        ERX1946697
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946698
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.8
        1.4
        ERX1946698
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946699
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.8
        1.4
        ERX1946699
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946700
        pass
        RSeQC
        auto
        unstranded
        49.7
        49.0
        1.3
        ERX1946700
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946701
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.0
        1.5
        ERX1946701
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946702
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.7
        1.5
        ERX1946702
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946703
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.0
        1.6
        ERX1946703
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946704
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.7
        1.7
        ERX1946704
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946705
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.6
        1.7
        ERX1946705
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946706
        pass
        RSeQC
        auto
        unstranded
        49.9
        48.6
        1.6
        ERX1946706
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946707
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.8
        1.7
        ERX1946707
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946708
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.8
        1.6
        ERX1946708
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946709
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.9
        1.5
        ERX1946709
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946710
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.8
        1.7
        ERX1946710
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946711
        pass
        RSeQC
        auto
        unstranded
        49.4
        48.9
        1.7
        ERX1946711
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946712
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.6
        1.7
        ERX1946712
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946713
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.0
        1.5
        ERX1946713
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946714
        pass
        RSeQC
        auto
        unstranded
        49.7
        49.0
        1.3
        ERX1946714
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946715
        pass
        RSeQC
        auto
        unstranded
        50.0
        48.8
        1.2
        ERX1946715
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946716
        pass
        RSeQC
        auto
        unstranded
        50.0
        48.8
        1.2
        ERX1946716
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946717
        pass
        RSeQC
        auto
        unstranded
        50.0
        49.0
        1.1
        ERX1946717
        pass
        Salmon
        auto
        unstranded
        50.9
        49.1
        0.0
        ERX1946718
        pass
        RSeQC
        auto
        unstranded
        49.6
        49.1
        1.3
        ERX1946718
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946719
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.2
        1.3
        ERX1946719
        pass
        Salmon
        auto
        unstranded
        50.6
        49.4
        0.0
        ERX1946720
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.8
        1.4
        ERX1946720
        pass
        Salmon
        auto
        unstranded
        50.9
        49.1
        0.0
        ERX1946721
        pass
        RSeQC
        auto
        unstranded
        49.9
        48.8
        1.3
        ERX1946721
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946722
        pass
        RSeQC
        auto
        unstranded
        50.0
        48.7
        1.4
        ERX1946722
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946723
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.3
        1.4
        ERX1946723
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946724
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.9
        1.3
        ERX1946724
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946725
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.9
        1.4
        ERX1946725
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946726
        pass
        RSeQC
        auto
        unstranded
        49.6
        49.0
        1.3
        ERX1946726
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946727
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.9
        1.6
        ERX1946727
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946728
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.9
        1.5
        ERX1946728
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946729
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.9
        1.4
        ERX1946729
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946730
        pass
        RSeQC
        auto
        unstranded
        49.4
        48.8
        1.8
        ERX1946730
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946731
        pass
        RSeQC
        auto
        unstranded
        49.4
        48.8
        1.8
        ERX1946731
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946732
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.6
        2.0
        ERX1946732
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946733
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.7
        1.8
        ERX1946733
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946734
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.5
        1.8
        ERX1946734
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946735
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.6
        1.7
        ERX1946735
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946736
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.7
        1.7
        ERX1946736
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946737
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.7
        1.6
        ERX1946737
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946738
        pass
        RSeQC
        auto
        unstranded
        49.2
        49.1
        1.6
        ERX1946738
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946739
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.7
        1.6
        ERX1946739
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946740
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.9
        1.6
        ERX1946740
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946741
        pass
        RSeQC
        auto
        unstranded
        50.2
        48.4
        1.4
        ERX1946741
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946742
        pass
        RSeQC
        auto
        unstranded
        50.1
        49.1
        0.8
        ERX1946742
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946743
        pass
        RSeQC
        auto
        unstranded
        49.6
        49.0
        1.4
        ERX1946743
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946744
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.3
        1.2
        ERX1946744
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946745
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.3
        1.4
        ERX1946745
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946746
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.0
        1.5
        ERX1946746
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946747
        pass
        RSeQC
        auto
        unstranded
        50.0
        48.9
        1.2
        ERX1946747
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946748
        pass
        RSeQC
        auto
        unstranded
        49.8
        49.0
        1.2
        ERX1946748
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946749
        pass
        RSeQC
        auto
        unstranded
        50.0
        48.8
        1.2
        ERX1946749
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946750
        pass
        RSeQC
        auto
        unstranded
        49.7
        49.0
        1.3
        ERX1946750
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946751
        pass
        RSeQC
        auto
        unstranded
        49.6
        49.1
        1.3
        ERX1946751
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946752
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.3
        1.4
        ERX1946752
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946753
        pass
        RSeQC
        auto
        unstranded
        49.7
        49.0
        1.3
        ERX1946753
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946754
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.1
        1.4
        ERX1946754
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946755
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.0
        1.4
        ERX1946755
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946756
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.9
        1.6
        ERX1946756
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946757
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.8
        1.5
        ERX1946757
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946758
        pass
        RSeQC
        auto
        unstranded
        49.2
        49.2
        1.6
        ERX1946758
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946759
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.1
        1.5
        ERX1946759
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946760
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.2
        1.5
        ERX1946760
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946761
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.1
        1.4
        ERX1946761
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946762
        pass
        RSeQC
        auto
        unstranded
        49.9
        48.9
        1.2
        ERX1946762
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946763
        pass
        RSeQC
        auto
        unstranded
        49.9
        48.8
        1.3
        ERX1946763
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946764
        pass
        RSeQC
        auto
        unstranded
        49.4
        49.3
        1.3
        ERX1946764
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946765
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.1
        1.4
        ERX1946765
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946766
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.1
        1.4
        ERX1946766
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946767
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.1
        1.4
        ERX1946767
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946768
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.8
        1.4
        ERX1946768
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946769
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.9
        1.4
        ERX1946769
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946770
        pass
        RSeQC
        auto
        unstranded
        49.2
        49.3
        1.4
        ERX1946770
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946771
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.4
        1.9
        ERX1946771
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946772
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.6
        1.8
        ERX1946772
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946773
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.4
        1.9
        ERX1946773
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946774
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.7
        1.8
        ERX1946774
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946775
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.7
        1.8
        ERX1946775
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946776
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.5
        1.7
        ERX1946776
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946777
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.7
        1.6
        ERX1946777
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946778
        pass
        RSeQC
        auto
        unstranded
        50.0
        48.4
        1.6
        ERX1946778
        pass
        Salmon
        auto
        unstranded
        50.6
        49.4
        0.0
        ERX1946779
        pass
        RSeQC
        auto
        unstranded
        49.6
        49.1
        1.4
        ERX1946779
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946780
        pass
        RSeQC
        auto
        unstranded
        49.4
        48.6
        2.0
        ERX1946780
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946781
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.8
        1.7
        ERX1946781
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946782
        pass
        RSeQC
        auto
        unstranded
        49.4
        49.0
        1.5
        ERX1946782
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946783
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.9
        1.3
        ERX1946783
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946784
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.9
        1.4
        ERX1946784
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946785
        pass
        RSeQC
        auto
        unstranded
        50.0
        48.8
        1.3
        ERX1946785
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946786
        pass
        RSeQC
        auto
        unstranded
        50.0
        48.9
        1.1
        ERX1946786
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946787
        pass
        RSeQC
        auto
        unstranded
        50.1
        48.9
        1.0
        ERX1946787
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946788
        pass
        RSeQC
        auto
        unstranded
        50.1
        48.6
        1.3
        ERX1946788
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946789
        pass
        RSeQC
        auto
        unstranded
        49.7
        49.3
        1.0
        ERX1946789
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946790
        pass
        RSeQC
        auto
        unstranded
        50.0
        48.8
        1.1
        ERX1946790
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946791
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.6
        1.8
        ERX1946791
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946792
        pass
        RSeQC
        auto
        unstranded
        49.6
        49.1
        1.3
        ERX1946792
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946793
        pass
        RSeQC
        auto
        unstranded
        49.9
        48.8
        1.3
        ERX1946793
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946794
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.1
        1.4
        ERX1946794
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946795
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.0
        1.4
        ERX1946795
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946796
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.9
        1.3
        ERX1946796
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946797
        pass
        RSeQC
        auto
        unstranded
        49.4
        49.0
        1.7
        ERX1946797
        pass
        Salmon
        auto
        unstranded
        50.0
        50.0
        0.0
        ERX1946798
        pass
        RSeQC
        auto
        unstranded
        49.4
        49.1
        1.5
        ERX1946798
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946799
        pass
        RSeQC
        auto
        unstranded
        49.4
        49.0
        1.6
        ERX1946799
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946800
        pass
        RSeQC
        auto
        unstranded
        49.3
        48.9
        1.8
        ERX1946800
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946801
        pass
        RSeQC
        auto
        unstranded
        49.4
        48.8
        1.8
        ERX1946801
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946802
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.8
        1.6
        ERX1946802
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946803
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.8
        1.7
        ERX1946803
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946804
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.8
        1.6
        ERX1946804
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946805
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.3
        1.4
        ERX1946805
        pass
        Salmon
        auto
        unstranded
        50.0
        50.0
        0.0
        ERX1946806
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.8
        1.7
        ERX1946806
        pass
        Salmon
        auto
        unstranded
        50.0
        50.0
        0.0
        ERX1946807
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.0
        1.7
        ERX1946807
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946808
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.0
        1.7
        ERX1946808
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946809
        pass
        RSeQC
        auto
        unstranded
        49.1
        49.2
        1.7
        ERX1946809
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946810
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.0
        1.5
        ERX1946810
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946811
        pass
        RSeQC
        auto
        unstranded
        49.9
        48.9
        1.2
        ERX1946811
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946812
        pass
        RSeQC
        auto
        unstranded
        49.9
        48.9
        1.3
        ERX1946812
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946813
        pass
        RSeQC
        auto
        unstranded
        50.5
        48.4
        1.1
        ERX1946813
        pass
        Salmon
        auto
        unstranded
        50.8
        49.2
        0.0
        ERX1946814
        pass
        RSeQC
        auto
        unstranded
        49.6
        49.2
        1.1
        ERX1946814
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946815
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.1
        1.4
        ERX1946815
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946816
        pass
        RSeQC
        auto
        unstranded
        49.6
        49.0
        1.4
        ERX1946816
        pass
        Salmon
        auto
        unstranded
        50.6
        49.4
        0.0
        ERX1946817
        pass
        RSeQC
        auto
        unstranded
        50.0
        48.7
        1.3
        ERX1946817
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946818
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.9
        1.3
        ERX1946818
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946819
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.4
        1.4
        ERX1946819
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946820
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.9
        1.4
        ERX1946820
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946821
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.8
        1.4
        ERX1946821
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946822
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.3
        1.3
        ERX1946822
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946823
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.2
        1.5
        ERX1946823
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946824
        pass
        RSeQC
        auto
        unstranded
        49.6
        49.0
        1.4
        ERX1946824
        pass
        Salmon
        auto
        unstranded
        50.0
        50.0
        0.0
        ERX1946825
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.9
        1.4
        ERX1946825
        pass
        Salmon
        auto
        unstranded
        50.0
        50.0
        0.0
        ERX1946826
        pass
        RSeQC
        auto
        unstranded
        49.2
        48.9
        1.8
        ERX1946826
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946827
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.0
        1.7
        ERX1946827
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946828
        pass
        RSeQC
        auto
        unstranded
        49.2
        48.9
        1.9
        ERX1946828
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946829
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.8
        1.8
        ERX1946829
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946830
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.6
        1.7
        ERX1946830
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946831
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.8
        1.7
        ERX1946831
        pass
        Salmon
        auto
        unstranded
        50.0
        50.0
        0.0
        ERX1946832
        pass
        RSeQC
        auto
        unstranded
        49.1
        49.2
        1.8
        ERX1946832
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946833
        pass
        RSeQC
        auto
        unstranded
        49.4
        48.9
        1.7
        ERX1946833
        pass
        Salmon
        auto
        unstranded
        50.0
        50.0
        0.0
        ERX1946834
        pass
        RSeQC
        auto
        unstranded
        49.4
        49.0
        1.5
        ERX1946834
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946835
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.9
        1.6
        ERX1946835
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946836
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.8
        1.6
        ERX1946836
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946837
        pass
        RSeQC
        auto
        unstranded
        49.9
        48.7
        1.4
        ERX1946837
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946838
        pass
        RSeQC
        auto
        unstranded
        50.1
        49.0
        1.0
        ERX1946838
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946839
        pass
        RSeQC
        auto
        unstranded
        49.9
        48.8
        1.4
        ERX1946839
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946840
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.9
        1.3
        ERX1946840
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946841
        pass
        RSeQC
        auto
        unstranded
        49.4
        49.1
        1.4
        ERX1946841
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946842
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.9
        1.4
        ERX1946842
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946843
        pass
        RSeQC
        auto
        unstranded
        49.0
        49.1
        2.0
        ERX1946843
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946844
        pass
        RSeQC
        auto
        unstranded
        49.3
        48.7
        2.0
        ERX1946844
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946845
        pass
        RSeQC
        auto
        unstranded
        49.0
        49.1
        2.0
        ERX1946845
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946846
        pass
        RSeQC
        auto
        unstranded
        49.4
        48.9
        1.7
        ERX1946846
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946847
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.7
        1.6
        ERX1946847
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946848
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.8
        1.5
        ERX1946848
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946849
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.3
        2.2
        ERX1946849
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946850
        pass
        RSeQC
        auto
        unstranded
        49.4
        48.8
        1.9
        ERX1946850
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946851
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.1
        1.6
        ERX1946851
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946852
        pass
        RSeQC
        auto
        unstranded
        49.6
        49.0
        1.5
        ERX1946852
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946853
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.0
        1.5
        ERX1946853
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946854
        pass
        RSeQC
        auto
        unstranded
        49.9
        48.9
        1.2
        ERX1946854
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946855
        pass
        RSeQC
        auto
        unstranded
        49.8
        49.2
        0.9
        ERX1946855
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946856
        pass
        RSeQC
        auto
        unstranded
        49.8
        49.1
        1.0
        ERX1946856
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946857
        pass
        RSeQC
        auto
        unstranded
        49.9
        49.1
        1.0
        ERX1946857
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946858
        pass
        RSeQC
        auto
        unstranded
        49.7
        49.1
        1.2
        ERX1946858
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946859
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.2
        1.3
        ERX1946859
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946860
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.8
        1.8
        ERX1946860
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946861
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.8
        1.4
        ERX1946861
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946862
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.8
        1.4
        ERX1946862
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946863
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.8
        1.5
        ERX1946863
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946864
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.9
        1.4
        ERX1946864
        pass
        Salmon
        auto
        unstranded
        50.6
        49.4
        0.0
        ERX1946865
        pass
        RSeQC
        auto
        unstranded
        49.7
        49.0
        1.3
        ERX1946865
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946866
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.9
        1.5
        ERX1946866
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946867
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.0
        1.5
        ERX1946867
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946868
        pass
        RSeQC
        auto
        unstranded
        49.4
        48.9
        1.7
        ERX1946868
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946869
        pass
        RSeQC
        auto
        unstranded
        49.3
        48.8
        1.9
        ERX1946869
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946870
        pass
        RSeQC
        auto
        unstranded
        49.4
        48.8
        1.7
        ERX1946870
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946871
        pass
        RSeQC
        auto
        unstranded
        49.4
        48.9
        1.7
        ERX1946871
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946872
        pass
        RSeQC
        auto
        unstranded
        49.4
        48.8
        1.9
        ERX1946872
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946873
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.8
        1.6
        ERX1946873
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946874
        pass
        RSeQC
        auto
        unstranded
        49.2
        49.2
        1.6
        ERX1946874
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946875
        pass
        RSeQC
        auto
        unstranded
        49.2
        49.0
        1.8
        ERX1946875
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946876
        pass
        RSeQC
        auto
        unstranded
        49.2
        48.9
        1.8
        ERX1946876
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946877
        pass
        RSeQC
        auto
        unstranded
        49.3
        48.8
        1.9
        ERX1946877
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946878
        pass
        RSeQC
        auto
        unstranded
        49.0
        49.3
        1.7
        ERX1946878
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946879
        pass
        RSeQC
        auto
        unstranded
        49.9
        48.6
        1.5
        ERX1946879
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946880
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.9
        1.3
        ERX1946880
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946881
        pass
        RSeQC
        auto
        unstranded
        49.7
        49.4
        0.9
        ERX1946881
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946882
        pass
        RSeQC
        auto
        unstranded
        50.2
        48.6
        1.3
        ERX1946882
        pass
        Salmon
        auto
        unstranded
        50.6
        49.4
        0.0
        ERX1946883
        pass
        RSeQC
        auto
        unstranded
        49.6
        49.0
        1.3
        ERX1946883
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946884
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.0
        1.5
        ERX1946884
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946885
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.0
        1.5
        ERX1946885
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946886
        pass
        RSeQC
        auto
        unstranded
        49.7
        49.1
        1.2
        ERX1946886
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946887
        pass
        RSeQC
        auto
        unstranded
        49.7
        49.0
        1.3
        ERX1946887
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946888
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.8
        1.5
        ERX1946888
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946889
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.9
        1.3
        ERX1946889
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946890
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.8
        1.4
        ERX1946890
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946891
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.9
        1.4
        ERX1946891
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946892
        pass
        RSeQC
        auto
        unstranded
        49.5
        48.9
        1.5
        ERX1946892
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946893
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.9
        1.5
        ERX1946893
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946894
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.8
        1.4
        ERX1946894
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946895
        pass
        RSeQC
        auto
        unstranded
        49.2
        48.9
        1.9
        ERX1946895
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946896
        pass
        RSeQC
        auto
        unstranded
        49.2
        49.0
        1.7
        ERX1946896
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946897
        pass
        RSeQC
        auto
        unstranded
        49.2
        48.9
        1.9
        ERX1946897
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946898
        pass
        RSeQC
        auto
        unstranded
        49.4
        48.8
        1.8
        ERX1946898
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946899
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.6
        1.8
        ERX1946899
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946900
        pass
        RSeQC
        auto
        unstranded
        49.3
        49.0
        1.8
        ERX1946900
        pass
        Salmon
        auto
        unstranded
        50.1
        49.9
        0.0
        ERX1946901
        pass
        RSeQC
        auto
        unstranded
        49.2
        49.0
        1.8
        ERX1946901
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946902
        pass
        RSeQC
        auto
        unstranded
        49.7
        48.6
        1.8
        ERX1946902
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946903
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.7
        1.7
        ERX1946903
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946904
        pass
        RSeQC
        auto
        unstranded
        49.8
        48.6
        1.6
        ERX1946904
        pass
        Salmon
        auto
        unstranded
        50.3
        49.7
        0.0
        ERX1946905
        pass
        RSeQC
        auto
        unstranded
        49.6
        48.7
        1.7
        ERX1946905
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946906
        pass
        RSeQC
        auto
        unstranded
        49.6
        49.0
        1.4
        ERX1946906
        pass
        Salmon
        auto
        unstranded
        50.5
        49.5
        0.0
        ERX1946907
        pass
        RSeQC
        auto
        unstranded
        49.8
        49.2
        1.0
        ERX1946907
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946908
        pass
        RSeQC
        auto
        unstranded
        49.9
        49.2
        1.0
        ERX1946908
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0
        ERX1946909
        pass
        RSeQC
        auto
        unstranded
        49.9
        48.7
        1.4
        ERX1946909
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946910
        pass
        RSeQC
        auto
        unstranded
        49.5
        49.1
        1.4
        ERX1946910
        pass
        Salmon
        auto
        unstranded
        50.2
        49.8
        0.0
        ERX1946911
        pass
        RSeQC
        auto
        unstranded
        50.0
        48.6
        1.4
        ERX1946911
        pass
        Salmon
        auto
        unstranded
        50.4
        49.6
        0.0

        FastQC (raw)

        This section of the report shows FastQC results before adapter trimming.URL: http://www.bioinformatics.babraham.ac.uk/projects/fastqc

        Sequence Counts

        Sequence counts for each sample. Duplicate read counts are an estimate only.

        This plot show the total number of reads, broken down into unique and duplicate if possible (only more recent versions of FastQC give duplicate info).

        You can read more about duplicate calculation in the FastQC documentation. A small part has been copied here for convenience:

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        Created with MultiQC

        Sequence Quality Histograms

        The mean quality value across each base position in the read.

        To enable multiple samples to be plotted on the same graph, only the mean quality scores are plotted (unlike the box plots seen in FastQC reports).

        Taken from the FastQC help:

        The y-axis on the graph shows the quality scores. The higher the score, the better the base call. The background of the graph divides the y axis into very good quality calls (green), calls of reasonable quality (orange), and calls of poor quality (red). The quality of calls on most platforms will degrade as the run progresses, so it is common to see base calls falling into the orange area towards the end of a read.

        Created with MultiQC

        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality.

        From the FastQC help:

        The per sequence quality score report allows you to see if a subset of your sequences have universally low quality values. It is often the case that a subset of sequences will have universally poor quality, however these should represent only a small percentage of the total sequences.

        Created with MultiQC

        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called.

        To enable multiple samples to be shown in a single plot, the base composition data is shown as a heatmap. The colours represent the balance between the four bases: an even distribution should give an even muddy brown colour. Hover over the plot to see the percentage of the four bases under the cursor.

        To see the data as a line plot, as in the original FastQC graph, click on a sample track.

        From the FastQC help:

        Per Base Sequence Content plots out the proportion of each base position in a file for which each of the four normal DNA bases has been called.

        In a random library you would expect that there would be little to no difference between the different bases of a sequence run, so the lines in this plot should run parallel with each other. The relative amount of each base should reflect the overall amount of these bases in your genome, but in any case they should not be hugely imbalanced from each other.

        It's worth noting that some types of library will always produce biased sequence composition, normally at the start of the read. Libraries produced by priming using random hexamers (including nearly all RNA-Seq libraries) and those which were fragmented using transposases inherit an intrinsic bias in the positions at which reads start. This bias does not concern an absolute sequence, but instead provides enrichement of a number of different K-mers at the 5' end of the reads. Whilst this is a true technical bias, it isn't something which can be corrected by trimming and in most cases doesn't seem to adversely affect the downstream analysis.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content.

        From the FastQC help:

        This module measures the GC content across the whole length of each sequence in a file and compares it to a modelled normal distribution of GC content.

        In a normal random library you would expect to see a roughly normal distribution of GC content where the central peak corresponds to the overall GC content of the underlying genome. Since we don't know the GC content of the genome the modal GC content is calculated from the observed data and used to build a reference distribution.

        An unusually shaped distribution could indicate a contaminated library or some other kinds of biased subset. A normal distribution which is shifted indicates some systematic bias which is independent of base position. If there is a systematic bias which creates a shifted normal distribution then this won't be flagged as an error by the module since it doesn't know what your genome's GC content should be.

        Created with MultiQC

        Per Base N Content

        The percentage of base calls at each position for which an N was called.

        From the FastQC help:

        If a sequencer is unable to make a base call with sufficient confidence then it will normally substitute an N rather than a conventional base call. This graph shows the percentage of base calls at each position for which an N was called.

        It's not unusual to see a very low proportion of Ns appearing in a sequence, especially nearer the end of a sequence. However, if this proportion rises above a few percent it suggests that the analysis pipeline was unable to interpret the data well enough to make valid base calls.

        Created with MultiQC

        Sequence Length Distribution

        All samples have sequences of a single length (83bp, 101bp) See the General Statistics Table.

        Sequence Duplication Levels

        The relative level of duplication found for every sequence.

        From the FastQC Help:

        In a diverse library most sequences will occur only once in the final set. A low level of duplication may indicate a very high level of coverage of the target sequence, but a high level of duplication is more likely to indicate some kind of enrichment bias (e.g. PCR over amplification). This graph shows the degree of duplication for every sequence in a library: the relative number of sequences with different degrees of duplication.

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        In a properly diverse library most sequences should fall into the far left of the plot in both the red and blue lines. A general level of enrichment, indicating broad oversequencing in the library will tend to flatten the lines, lowering the low end and generally raising other categories. More specific enrichments of subsets, or the presence of low complexity contaminants will tend to produce spikes towards the right of the plot.

        Created with MultiQC

        Overrepresented sequences by sample

        The total amount of overrepresented sequences found in each library.

        FastQC calculates and lists overrepresented sequences in FastQ files. It would not be possible to show this for all samples in a MultiQC report, so instead this plot shows the number of sequences categorized as overrepresented.

        Sometimes, a single sequence may account for a large number of reads in a dataset. To show this, the bars are split into two: the first shows the overrepresented reads that come from the single most common sequence. The second shows the total count from all remaining overrepresented sequences.

        From the FastQC Help:

        A normal high-throughput library will contain a diverse set of sequences, with no individual sequence making up a tiny fraction of the whole. Finding that a single sequence is very overrepresented in the set either means that it is highly biologically significant, or indicates that the library is contaminated, or not as diverse as you expected.

        FastQC lists all the sequences which make up more than 0.1% of the total. To conserve memory only sequences which appear in the first 100,000 sequences are tracked to the end of the file. It is therefore possible that a sequence which is overrepresented but doesn't appear at the start of the file for some reason could be missed by this module.

        468 samples had less than 1% of reads made up of overrepresented sequences

        Top overrepresented sequences

        Top overrepresented sequences across all samples. The table shows 20 most overrepresented sequences across all samples, ranked by the number of samples they occur in.

        Showing 0/1 rows and 3/3 columns.
        Overrepresented sequenceReportsOccurrences% of all reads
        GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGC
        3
        104696
        0.0011%

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position.

        Note that only samples with ≥ 0.1% adapter contamination are shown.

        There may be several lines per sample, as one is shown for each adapter detected in the file.

        From the FastQC Help:

        The plot shows a cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. Once a sequence has been seen in a read it is counted as being present right through to the end of the read so the percentages you see will only increase as the read length goes on.

        Created with MultiQC

        Status Checks

        Status for each FastQC section showing whether results seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        FastQC assigns a status for each section of the report. These give a quick evaluation of whether the results of the analysis seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        It is important to stress that although the analysis results appear to give a pass/fail result, these evaluations must be taken in the context of what you expect from your library. A 'normal' sample as far as FastQC is concerned is random and diverse. Some experiments may be expected to produce libraries which are biased in particular ways. You should treat the summary evaluations therefore as pointers to where you should concentrate your attention and understand why your library may not look random and diverse.

        Specific guidance on how to interpret the output of each module can be found in the relevant report section, or in the FastQC help.

        In this heatmap, we summarise all of these into a single heatmap for a quick overview. Note that not all FastQC sections have plots in MultiQC reports, but all status checks are shown in this heatmap.

        Created with MultiQC

        Cutadapt

        Finds and removes adapter sequences, primers, poly-A tails, and other types of unwanted sequences.URL: https://cutadapt.readthedocs.ioDOI: 10.14806/ej.17.1.200

        Filtered Reads

        This plot shows the number of reads (SE) / pairs (PE) removed by Cutadapt.

        Created with MultiQC

        Trimmed Sequence Lengths (3')

        This plot shows the number of reads with certain lengths of adapter trimmed for the 3' end.

        Obs/Exp shows the raw counts divided by the number expected due to sequencing errors. A defined peak may be related to adapter length.

        See the cutadapt documentation for more information on how these numbers are generated.

        Created with MultiQC

        FastQC (trimmed)

        This section of the report shows FastQC results after adapter trimming.URL: http://www.bioinformatics.babraham.ac.uk/projects/fastqc

        Sequence Counts

        Sequence counts for each sample. Duplicate read counts are an estimate only.

        This plot show the total number of reads, broken down into unique and duplicate if possible (only more recent versions of FastQC give duplicate info).

        You can read more about duplicate calculation in the FastQC documentation. A small part has been copied here for convenience:

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        Created with MultiQC

        Sequence Quality Histograms

        The mean quality value across each base position in the read.

        To enable multiple samples to be plotted on the same graph, only the mean quality scores are plotted (unlike the box plots seen in FastQC reports).

        Taken from the FastQC help:

        The y-axis on the graph shows the quality scores. The higher the score, the better the base call. The background of the graph divides the y axis into very good quality calls (green), calls of reasonable quality (orange), and calls of poor quality (red). The quality of calls on most platforms will degrade as the run progresses, so it is common to see base calls falling into the orange area towards the end of a read.

        Created with MultiQC

        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality.

        From the FastQC help:

        The per sequence quality score report allows you to see if a subset of your sequences have universally low quality values. It is often the case that a subset of sequences will have universally poor quality, however these should represent only a small percentage of the total sequences.

        Created with MultiQC

        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called.

        To enable multiple samples to be shown in a single plot, the base composition data is shown as a heatmap. The colours represent the balance between the four bases: an even distribution should give an even muddy brown colour. Hover over the plot to see the percentage of the four bases under the cursor.

        To see the data as a line plot, as in the original FastQC graph, click on a sample track.

        From the FastQC help:

        Per Base Sequence Content plots out the proportion of each base position in a file for which each of the four normal DNA bases has been called.

        In a random library you would expect that there would be little to no difference between the different bases of a sequence run, so the lines in this plot should run parallel with each other. The relative amount of each base should reflect the overall amount of these bases in your genome, but in any case they should not be hugely imbalanced from each other.

        It's worth noting that some types of library will always produce biased sequence composition, normally at the start of the read. Libraries produced by priming using random hexamers (including nearly all RNA-Seq libraries) and those which were fragmented using transposases inherit an intrinsic bias in the positions at which reads start. This bias does not concern an absolute sequence, but instead provides enrichement of a number of different K-mers at the 5' end of the reads. Whilst this is a true technical bias, it isn't something which can be corrected by trimming and in most cases doesn't seem to adversely affect the downstream analysis.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content.

        From the FastQC help:

        This module measures the GC content across the whole length of each sequence in a file and compares it to a modelled normal distribution of GC content.

        In a normal random library you would expect to see a roughly normal distribution of GC content where the central peak corresponds to the overall GC content of the underlying genome. Since we don't know the GC content of the genome the modal GC content is calculated from the observed data and used to build a reference distribution.

        An unusually shaped distribution could indicate a contaminated library or some other kinds of biased subset. A normal distribution which is shifted indicates some systematic bias which is independent of base position. If there is a systematic bias which creates a shifted normal distribution then this won't be flagged as an error by the module since it doesn't know what your genome's GC content should be.

        Created with MultiQC

        Per Base N Content

        The percentage of base calls at each position for which an N was called.

        From the FastQC help:

        If a sequencer is unable to make a base call with sufficient confidence then it will normally substitute an N rather than a conventional base call. This graph shows the percentage of base calls at each position for which an N was called.

        It's not unusual to see a very low proportion of Ns appearing in a sequence, especially nearer the end of a sequence. However, if this proportion rises above a few percent it suggests that the analysis pipeline was unable to interpret the data well enough to make valid base calls.

        Created with MultiQC

        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help

        Created with MultiQC

        Sequence Duplication Levels

        The relative level of duplication found for every sequence.

        From the FastQC Help:

        In a diverse library most sequences will occur only once in the final set. A low level of duplication may indicate a very high level of coverage of the target sequence, but a high level of duplication is more likely to indicate some kind of enrichment bias (e.g. PCR over amplification). This graph shows the degree of duplication for every sequence in a library: the relative number of sequences with different degrees of duplication.

        Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

        The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

        In a properly diverse library most sequences should fall into the far left of the plot in both the red and blue lines. A general level of enrichment, indicating broad oversequencing in the library will tend to flatten the lines, lowering the low end and generally raising other categories. More specific enrichments of subsets, or the presence of low complexity contaminants will tend to produce spikes towards the right of the plot.

        Created with MultiQC

        Overrepresented sequences by sample

        The total amount of overrepresented sequences found in each library.

        FastQC calculates and lists overrepresented sequences in FastQ files. It would not be possible to show this for all samples in a MultiQC report, so instead this plot shows the number of sequences categorized as overrepresented.

        Sometimes, a single sequence may account for a large number of reads in a dataset. To show this, the bars are split into two: the first shows the overrepresented reads that come from the single most common sequence. The second shows the total count from all remaining overrepresented sequences.

        From the FastQC Help:

        A normal high-throughput library will contain a diverse set of sequences, with no individual sequence making up a tiny fraction of the whole. Finding that a single sequence is very overrepresented in the set either means that it is highly biologically significant, or indicates that the library is contaminated, or not as diverse as you expected.

        FastQC lists all the sequences which make up more than 0.1% of the total. To conserve memory only sequences which appear in the first 100,000 sequences are tracked to the end of the file. It is therefore possible that a sequence which is overrepresented but doesn't appear at the start of the file for some reason could be missed by this module.

        468 samples had less than 1% of reads made up of overrepresented sequences

        Top overrepresented sequences

        Top overrepresented sequences across all samples. The table shows 20 most overrepresented sequences across all samples, ranked by the number of samples they occur in.

        Showing 0/0 rows.
        Overrepresented sequence

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position.

        Note that only samples with ≥ 0.1% adapter contamination are shown.

        There may be several lines per sample, as one is shown for each adapter detected in the file.

        From the FastQC Help:

        The plot shows a cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. Once a sequence has been seen in a read it is counted as being present right through to the end of the read so the percentages you see will only increase as the read length goes on.

        Created with MultiQC

        Status Checks

        Status for each FastQC section showing whether results seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        FastQC assigns a status for each section of the report. These give a quick evaluation of whether the results of the analysis seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

        It is important to stress that although the analysis results appear to give a pass/fail result, these evaluations must be taken in the context of what you expect from your library. A 'normal' sample as far as FastQC is concerned is random and diverse. Some experiments may be expected to produce libraries which are biased in particular ways. You should treat the summary evaluations therefore as pointers to where you should concentrate your attention and understand why your library may not look random and diverse.

        Specific guidance on how to interpret the output of each module can be found in the relevant report section, or in the FastQC help.

        In this heatmap, we summarise all of these into a single heatmap for a quick overview. Note that not all FastQC sections have plots in MultiQC reports, but all status checks are shown in this heatmap.

        Created with MultiQC

        DupRadar

        DupRadar provides duplication rate quality control for RNA-Seq datasets. Highly expressed genes can be expected to have a lot of duplicate reads, but high numbers of duplicates at low read counts can indicate low library complexity with technical duplication. This plot shows the general linear models - a summary of the gene duplication distributions.URL: bioconductor.org/packages/release/bioc/html/dupRadar.html

        Created with MultiQC

        Picard

        Tools for manipulating high-throughput sequencing data.URL: http://broadinstitute.github.io/picard

        Mark Duplicates

        Number of reads, categorised by duplication state. Pair counts are doubled - see help text for details.

        The table in the Picard metrics file contains some columns referring read pairs and some referring to single reads.

        To make the numbers in this plot sum correctly, values referring to pairs are doubled according to the scheme below:

        • READS_IN_DUPLICATE_PAIRS = 2 * READ_PAIR_DUPLICATES
        • READS_IN_UNIQUE_PAIRS = 2 * (READ_PAIRS_EXAMINED - READ_PAIR_DUPLICATES)
        • READS_IN_UNIQUE_UNPAIRED = UNPAIRED_READS_EXAMINED - UNPAIRED_READ_DUPLICATES
        • READS_IN_DUPLICATE_PAIRS_OPTICAL = 2 * READ_PAIR_OPTICAL_DUPLICATES
        • READS_IN_DUPLICATE_PAIRS_NONOPTICAL = READS_IN_DUPLICATE_PAIRS - READS_IN_DUPLICATE_PAIRS_OPTICAL
        • READS_IN_DUPLICATE_UNPAIRED = UNPAIRED_READ_DUPLICATES
        • READS_UNMAPPED = UNMAPPED_READS
        Created with MultiQC

        QualiMap

        Quality control of alignment data and its derivatives like feature counts.URL: http://qualimap.bioinfo.cipf.esDOI: 10.1093/bioinformatics/btv566; 10.1093/bioinformatics/bts503

        Genomic origin of reads

        Classification of mapped reads as originating in exonic, intronic or intergenic regions. These can be displayed as either the number or percentage of mapped reads.

        There are currently three main approaches to map reads to transcripts in an RNA-seq experiment: mapping reads to a reference genome to identify expressed transcripts that are annotated (and discover those that are unknown), mapping reads to a reference transcriptome, and de novo assembly of transcript sequences (Conesa et al. 2016).

        For RNA-seq QC analysis, QualiMap can be used to assess alignments produced by the first of these approaches. For input, it requires a GTF annotation file along with a reference genome, which can be used to reconstruct the exon structure of known transcripts. This allows mapped reads to be grouped by whether they originate in an exonic region (for QualiMap, this may include 5′ and 3′ UTR regions as well as protein-coding exons), an intron, or an intergenic region (see the Qualimap 2 documentation).

        The inferred genomic origins of RNA-seq reads are presented here as a bar graph showing either the number or percentage of mapped reads in each read dataset that have been assigned to each type of genomic region. This graph can be used to assess the proportion of useful reads in an RNA-seq experiment. That proportion can be reduced by the presence of intron sequences, especially if depletion of ribosomal RNA was used during sample preparation (Sims et al. 2014). It can also be reduced by off-target transcripts, which are detected in greater numbers at the sequencing depths needed to detect poorly-expressed transcripts (Tarazona et al. 2011).

        Created with MultiQC

        Gene Coverage Profile

        Mean distribution of coverage depth across the length of all mapped transcripts.

        There are currently three main approaches to map reads to transcripts in an RNA-seq experiment: mapping reads to a reference genome to identify expressed transcripts that are annotated (and discover those that are unknown), mapping reads to a reference transcriptome, and de novo assembly of transcript sequences (Conesa et al. 2016).

        For RNA-seq QC analysis, QualiMap can be used to assess alignments produced by the first of these approaches. For input, it requires a GTF annotation file along with a reference genome, which can be used to reconstruct the exon structure of known transcripts. QualiMap uses this information to calculate the depth of coverage along the length of each annotated transcript. For a set of reads mapped to a transcript, the depth of coverage at a given base position is the number of high-quality reads that map to the transcript at that position (Sims et al. 2014).

        QualiMap calculates coverage depth at every base position of each annotated transcript. To enable meaningful comparison between transcripts, base positions are rescaled to relative positions expressed as percentage distance along each transcript (0%, 1%, …, 99%). For the set of transcripts with at least one mapped read, QualiMap plots the cumulative mapped-read depth (y-axis) at each relative transcript position (x-axis). This plot shows the gene coverage profile across all mapped transcripts for each read dataset. It provides a visual way to assess positional biases, such as an accumulation of mapped reads at the 3′ end of transcripts, which may indicate poor RNA quality in the original sample (Conesa et al. 2016).

        The Normalised plot is calculated by MultiQC to enable comparison of samples with varying sequencing depth. The cumulative mapped-read depth at each position across the averaged transcript position are divided by the total for that sample across the entire averaged transcript.

        Created with MultiQC

        RSeQC

        Evaluates high throughput RNA-seq data.URL: http://rseqc.sourceforge.netDOI: 10.1093/bioinformatics/bts356

        Read Distribution

        Read Distribution calculates how mapped reads are distributed over genome features.

        Created with MultiQC

        Inner Distance

        Inner Distance calculates the inner distance (or insert size) between two paired RNA reads. Note that this can be negative if fragments overlap.

        Created with MultiQC

        Read Duplication

        read_duplication.py calculates how many alignment positions have a certain number of exact duplicates. Note - plot truncated at 500 occurrences and binned.

        Created with MultiQC

        Junction Annotation

        Junction annotation compares detected splice junctions to a reference gene model. An RNA read can be spliced 2 or more times, each time is called a splicing event.

        Created with MultiQC

        Junction Saturation

        Junction Saturation counts the number of known splicing junctions that are observed in each dataset. If sequencing depth is sufficient, all (annotated) splice junctions should be rediscovered, resulting in a curve that reaches a plateau. Missing low abundance splice junctions can affect downstream analysis.

        Click a line to see the data side by side (as in the original RSeQC plot).

        Created with MultiQC

        Infer experiment

        Infer experiment counts the percentage of reads and read pairs that match the strandedness of overlapping transcripts. It can be used to infer whether RNA-seq library preps are stranded (sense or antisense).

        Created with MultiQC

        Bam Stat

        All numbers reported in millions.

        Created with MultiQC

        Samtools

        Toolkit for interacting with BAM/CRAM files.URL: http://www.htslib.orgDOI: 10.1093/bioinformatics/btp352

        Percent mapped

        Alignment metrics from samtools stats; mapped vs. unmapped reads vs. reads mapped with MQ0.

        For a set of samples that have come from the same multiplexed library, similar numbers of reads for each sample are expected. Large differences in numbers might indicate issues during the library preparation process. Whilst large differences in read numbers may be controlled for in downstream processings (e.g. read count normalisation), you may wish to consider whether the read depths achieved have fallen below recommended levels depending on the applications.

        Low alignment rates could indicate contamination of samples (e.g. adapter sequences), low sequencing quality or other artefacts. These can be further investigated in the sequence level QC (e.g. from FastQC).

        Reads mapped with MQ0 often indicate that the reads are ambiguously mapped to multiple locations in the reference sequence. This can be due to repetitive regions in the genome, the presence of alternative contigs in the reference, or due to reads that are too short to be uniquely mapped. These reads are often filtered out in downstream analyses.

        Created with MultiQC

        Alignment stats

        This module parses the output from samtools stats. All numbers in millions.

        Created with MultiQC

        Flagstat

        This module parses the output from samtools flagstat

        Created with MultiQC

        Mapped reads per contig

        The samtools idxstats tool counts the number of mapped reads per chromosome / contig. Chromosomes with < 0.1% of the total aligned reads are omitted from this plot.

        Created with MultiQC

        STAR

        Universal RNA-seq aligner.URL: https://github.com/alexdobin/STARDOI: 10.1093/bioinformatics/bts635

        Summary Statistics

        Summary statistics from the STAR alignment

        Showing 0/234 rows and 10/19 columns.
        Sample NameTotal readsAlignedAlignedUniq alignedUniq alignedMultimappedAvg. read lenAvg. mapped lenSplicesAnnotated splicesGT/AG splicesGC/AG splicesAT/AC splicesNon-canonical splicesMismatch rateDel rateDel lenIns rateIns len
        ERX1946678
        19.8M
        19.6M
        98.9%
        19.3M
        97.4%
        0.3M
        180.0bp
        180.3bp
        13.1M
        13.1M
        13.0M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946679
        20.1M
        19.9M
        98.9%
        19.5M
        97.1%
        0.4M
        180.0bp
        180.2bp
        13.5M
        13.5M
        13.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946680
        18.7M
        18.5M
        99.0%
        18.2M
        97.0%
        0.4M
        180.0bp
        180.3bp
        12.7M
        12.7M
        12.6M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946681
        15.2M
        15.0M
        98.9%
        14.7M
        97.2%
        0.3M
        180.0bp
        180.2bp
        10.2M
        10.2M
        10.0M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946682
        18.1M
        17.9M
        99.0%
        17.5M
        97.0%
        0.4M
        180.0bp
        180.2bp
        11.7M
        11.6M
        11.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946683
        16.1M
        15.9M
        98.9%
        15.6M
        96.9%
        0.3M
        180.0bp
        180.2bp
        10.0M
        10.0M
        9.9M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946684
        24.0M
        23.8M
        99.0%
        23.4M
        97.1%
        0.5M
        180.0bp
        180.1bp
        15.0M
        15.0M
        14.8M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946685
        16.1M
        15.9M
        99.0%
        15.6M
        97.2%
        0.3M
        180.0bp
        180.3bp
        10.4M
        10.4M
        10.3M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946686
        16.4M
        16.2M
        98.9%
        15.9M
        97.2%
        0.3M
        180.0bp
        180.3bp
        10.9M
        10.9M
        10.8M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946687
        16.4M
        16.2M
        99.1%
        15.7M
        95.8%
        0.5M
        181.0bp
        180.6bp
        10.4M
        10.4M
        10.3M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946688
        17.5M
        17.3M
        98.7%
        17.0M
        97.2%
        0.3M
        181.0bp
        180.4bp
        11.3M
        11.3M
        11.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946689
        18.6M
        18.4M
        98.9%
        18.1M
        97.4%
        0.3M
        181.0bp
        180.6bp
        12.0M
        12.0M
        11.9M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946690
        16.7M
        16.5M
        99.0%
        16.3M
        97.6%
        0.2M
        181.0bp
        180.6bp
        10.4M
        10.4M
        10.3M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946691
        18.7M
        18.4M
        98.4%
        18.0M
        96.2%
        0.4M
        182.0bp
        182.2bp
        11.7M
        11.7M
        11.6M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946692
        20.2M
        20.0M
        99.0%
        19.2M
        95.2%
        0.8M
        180.0bp
        180.5bp
        12.2M
        12.2M
        12.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946693
        17.7M
        17.5M
        98.9%
        17.1M
        96.5%
        0.4M
        181.0bp
        180.6bp
        11.1M
        11.1M
        11.0M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946694
        24.9M
        24.5M
        98.7%
        24.0M
        96.6%
        0.5M
        180.0bp
        180.4bp
        16.0M
        16.0M
        15.8M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946695
        22.9M
        22.7M
        99.0%
        22.4M
        97.7%
        0.3M
        179.0bp
        179.5bp
        15.1M
        15.1M
        14.9M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946696
        17.9M
        17.7M
        98.9%
        17.4M
        97.4%
        0.3M
        179.0bp
        179.4bp
        11.7M
        11.6M
        11.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946697
        18.4M
        18.3M
        99.0%
        18.0M
        97.4%
        0.3M
        179.0bp
        179.5bp
        12.1M
        12.1M
        12.0M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946698
        21.0M
        20.8M
        98.9%
        20.4M
        97.4%
        0.3M
        179.0bp
        179.4bp
        14.0M
        13.9M
        13.8M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946699
        18.4M
        18.2M
        98.9%
        17.9M
        97.3%
        0.3M
        179.0bp
        179.4bp
        11.8M
        11.8M
        11.6M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946700
        21.2M
        21.0M
        98.9%
        20.7M
        97.3%
        0.3M
        179.0bp
        179.4bp
        13.6M
        13.6M
        13.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946701
        24.0M
        23.7M
        98.9%
        23.3M
        97.1%
        0.4M
        179.0bp
        179.3bp
        15.5M
        15.4M
        15.3M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946702
        21.3M
        21.1M
        99.0%
        20.7M
        97.5%
        0.3M
        179.0bp
        179.3bp
        14.0M
        14.0M
        13.8M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946703
        20.9M
        20.7M
        99.0%
        20.4M
        97.5%
        0.3M
        179.0bp
        179.5bp
        13.4M
        13.4M
        13.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946704
        20.2M
        19.9M
        98.5%
        19.5M
        96.8%
        0.4M
        180.0bp
        179.8bp
        13.7M
        13.7M
        13.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946705
        19.8M
        19.5M
        98.5%
        19.2M
        96.7%
        0.4M
        180.0bp
        179.8bp
        13.6M
        13.6M
        13.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946706
        16.5M
        16.3M
        98.5%
        16.0M
        96.7%
        0.3M
        180.0bp
        179.7bp
        11.4M
        11.4M
        11.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946707
        18.0M
        17.7M
        98.6%
        17.4M
        96.8%
        0.3M
        180.0bp
        179.8bp
        12.3M
        12.3M
        12.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946708
        18.0M
        17.7M
        98.8%
        17.4M
        96.8%
        0.4M
        180.0bp
        179.7bp
        11.9M
        11.8M
        11.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946709
        19.1M
        18.9M
        98.7%
        18.5M
        96.8%
        0.4M
        180.0bp
        179.8bp
        12.3M
        12.3M
        12.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946710
        16.3M
        16.1M
        98.8%
        15.8M
        96.9%
        0.3M
        180.0bp
        179.8bp
        10.5M
        10.5M
        10.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946711
        18.8M
        18.6M
        98.7%
        18.2M
        96.8%
        0.4M
        180.0bp
        179.8bp
        12.3M
        12.3M
        12.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946712
        17.2M
        17.0M
        98.6%
        16.7M
        97.0%
        0.3M
        180.0bp
        179.7bp
        11.8M
        11.8M
        11.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946713
        22.9M
        22.6M
        98.8%
        22.2M
        97.1%
        0.4M
        180.0bp
        180.0bp
        15.2M
        15.2M
        15.1M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946714
        20.3M
        20.0M
        98.6%
        19.7M
        96.9%
        0.3M
        180.0bp
        180.0bp
        13.4M
        13.4M
        13.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946715
        19.5M
        19.3M
        98.9%
        19.0M
        97.3%
        0.3M
        180.0bp
        180.0bp
        12.8M
        12.8M
        12.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946716
        21.6M
        21.3M
        98.6%
        21.0M
        97.1%
        0.3M
        180.0bp
        179.9bp
        13.9M
        13.9M
        13.8M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946717
        19.4M
        19.2M
        98.9%
        18.9M
        97.2%
        0.3M
        180.0bp
        180.0bp
        12.6M
        12.6M
        12.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946718
        21.6M
        21.3M
        98.6%
        20.9M
        97.1%
        0.3M
        180.0bp
        179.9bp
        14.3M
        14.3M
        14.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946719
        25.2M
        24.9M
        98.7%
        24.5M
        97.2%
        0.4M
        180.0bp
        179.8bp
        16.7M
        16.7M
        16.5M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946720
        20.0M
        19.7M
        98.7%
        19.4M
        97.1%
        0.3M
        180.0bp
        179.8bp
        13.3M
        13.3M
        13.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946721
        18.2M
        17.9M
        98.7%
        17.6M
        97.0%
        0.3M
        180.0bp
        179.9bp
        12.4M
        12.4M
        12.3M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946722
        18.0M
        17.8M
        98.6%
        17.5M
        97.0%
        0.3M
        180.0bp
        179.8bp
        12.2M
        12.2M
        12.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946723
        20.5M
        20.3M
        98.6%
        19.9M
        96.9%
        0.4M
        180.0bp
        179.8bp
        13.9M
        13.9M
        13.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946724
        21.5M
        21.2M
        98.4%
        20.8M
        96.7%
        0.4M
        180.0bp
        179.8bp
        14.6M
        14.6M
        14.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946725
        20.5M
        20.2M
        98.5%
        19.8M
        96.8%
        0.3M
        180.0bp
        179.9bp
        13.9M
        13.9M
        13.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946726
        22.8M
        22.5M
        98.8%
        22.1M
        96.9%
        0.4M
        180.0bp
        179.9bp
        15.4M
        15.4M
        15.3M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946727
        24.9M
        24.5M
        98.6%
        24.1M
        96.7%
        0.5M
        180.0bp
        179.8bp
        16.9M
        16.9M
        16.7M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946728
        20.9M
        20.6M
        98.6%
        20.2M
        96.5%
        0.4M
        180.0bp
        179.8bp
        14.0M
        14.0M
        13.8M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946729
        18.9M
        18.6M
        98.7%
        18.3M
        97.0%
        0.3M
        180.0bp
        179.9bp
        12.8M
        12.8M
        12.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946730
        21.4M
        21.1M
        98.7%
        20.7M
        97.0%
        0.4M
        180.0bp
        180.1bp
        14.6M
        14.6M
        14.4M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946731
        19.5M
        19.2M
        98.6%
        18.9M
        96.8%
        0.4M
        180.0bp
        180.0bp
        13.3M
        13.3M
        13.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946732
        21.0M
        20.7M
        98.7%
        20.3M
        96.8%
        0.4M
        180.0bp
        180.1bp
        14.5M
        14.5M
        14.3M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946733
        21.6M
        21.3M
        98.7%
        20.9M
        96.9%
        0.4M
        180.0bp
        180.0bp
        14.8M
        14.8M
        14.6M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946734
        23.3M
        23.0M
        98.7%
        22.5M
        96.6%
        0.5M
        180.0bp
        180.0bp
        15.4M
        15.4M
        15.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946735
        21.2M
        20.9M
        98.6%
        20.5M
        96.6%
        0.4M
        180.0bp
        180.0bp
        13.6M
        13.6M
        13.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946736
        20.6M
        20.3M
        98.6%
        19.9M
        96.6%
        0.4M
        180.0bp
        179.9bp
        13.2M
        13.2M
        13.0M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946737
        18.4M
        18.2M
        98.6%
        17.8M
        96.8%
        0.3M
        180.0bp
        179.9bp
        12.1M
        12.1M
        12.0M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946738
        17.6M
        17.4M
        98.7%
        17.1M
        97.0%
        0.3M
        180.0bp
        180.1bp
        12.1M
        12.1M
        11.9M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946739
        21.0M
        20.7M
        98.6%
        20.3M
        96.8%
        0.4M
        180.0bp
        179.7bp
        13.6M
        13.6M
        13.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946740
        25.2M
        25.0M
        98.9%
        24.5M
        97.2%
        0.4M
        180.0bp
        179.9bp
        16.5M
        16.5M
        16.3M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946741
        23.5M
        23.2M
        98.9%
        22.9M
        97.4%
        0.4M
        180.0bp
        179.8bp
        15.3M
        15.3M
        15.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946742
        26.3M
        25.9M
        98.6%
        25.5M
        97.1%
        0.4M
        180.0bp
        179.8bp
        17.1M
        17.0M
        16.9M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946743
        24.3M
        23.9M
        98.7%
        23.5M
        96.9%
        0.4M
        180.0bp
        179.8bp
        15.9M
        15.9M
        15.7M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946744
        23.4M
        23.0M
        98.5%
        22.6M
        96.9%
        0.4M
        180.0bp
        179.7bp
        15.3M
        15.3M
        15.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946745
        21.4M
        21.1M
        98.8%
        20.8M
        97.2%
        0.3M
        180.0bp
        179.7bp
        14.3M
        14.3M
        14.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946746
        21.0M
        20.7M
        98.6%
        20.4M
        97.2%
        0.3M
        180.0bp
        179.7bp
        14.1M
        14.1M
        13.9M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946747
        16.6M
        16.4M
        98.7%
        16.2M
        97.1%
        0.3M
        197.0bp
        196.4bp
        12.4M
        12.4M
        12.3M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.2bp
        ERX1946748
        16.6M
        16.4M
        98.6%
        16.1M
        97.0%
        0.3M
        197.0bp
        196.4bp
        12.3M
        12.3M
        12.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.2bp
        ERX1946749
        16.8M
        16.6M
        98.6%
        16.3M
        97.0%
        0.3M
        197.0bp
        196.3bp
        12.5M
        12.5M
        12.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.2bp
        ERX1946750
        16.7M
        16.5M
        98.8%
        16.3M
        97.3%
        0.3M
        197.0bp
        196.9bp
        12.6M
        12.6M
        12.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946751
        16.7M
        16.5M
        98.8%
        16.2M
        97.2%
        0.3M
        197.0bp
        196.9bp
        12.5M
        12.5M
        12.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946752
        16.9M
        16.7M
        98.8%
        16.4M
        97.2%
        0.3M
        197.0bp
        196.9bp
        12.7M
        12.7M
        12.6M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946753
        22.5M
        22.3M
        98.9%
        21.9M
        97.2%
        0.4M
        197.0bp
        196.9bp
        16.7M
        16.7M
        16.6M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946754
        22.4M
        22.2M
        98.9%
        21.8M
        97.2%
        0.4M
        197.0bp
        196.9bp
        16.7M
        16.7M
        16.5M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946755
        22.7M
        22.5M
        98.9%
        22.1M
        97.2%
        0.4M
        197.0bp
        196.8bp
        16.9M
        16.9M
        16.7M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946756
        24.8M
        24.6M
        99.0%
        24.1M
        97.3%
        0.4M
        197.0bp
        196.9bp
        18.5M
        18.5M
        18.3M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946757
        24.7M
        24.5M
        99.0%
        24.0M
        97.3%
        0.4M
        197.0bp
        196.9bp
        18.5M
        18.4M
        18.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946758
        25.0M
        24.8M
        99.0%
        24.3M
        97.3%
        0.4M
        197.0bp
        196.9bp
        18.7M
        18.7M
        18.5M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946759
        22.5M
        22.2M
        98.5%
        21.8M
        96.8%
        0.4M
        197.0bp
        196.7bp
        16.7M
        16.7M
        16.5M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946760
        22.4M
        22.1M
        98.5%
        21.7M
        96.7%
        0.4M
        197.0bp
        196.7bp
        16.6M
        16.6M
        16.4M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946761
        22.7M
        22.4M
        98.5%
        22.0M
        96.8%
        0.4M
        197.0bp
        196.6bp
        16.9M
        16.8M
        16.7M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946762
        16.7M
        16.6M
        99.2%
        16.3M
        97.4%
        0.3M
        197.0bp
        196.9bp
        12.6M
        12.6M
        12.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946763
        16.7M
        16.5M
        99.2%
        16.2M
        97.4%
        0.3M
        197.0bp
        196.8bp
        12.5M
        12.5M
        12.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946764
        16.9M
        16.8M
        99.2%
        16.5M
        97.4%
        0.3M
        197.0bp
        196.8bp
        12.6M
        12.6M
        12.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946765
        17.4M
        17.3M
        99.0%
        17.0M
        97.2%
        0.3M
        197.0bp
        197.0bp
        12.0M
        12.0M
        11.9M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946766
        17.4M
        17.2M
        99.0%
        16.9M
        97.3%
        0.3M
        197.0bp
        197.0bp
        12.0M
        12.0M
        11.9M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946767
        17.6M
        17.4M
        99.0%
        17.1M
        97.2%
        0.3M
        197.0bp
        196.9bp
        12.1M
        12.1M
        12.0M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946768
        21.8M
        21.5M
        98.9%
        21.1M
        97.1%
        0.4M
        198.0bp
        197.0bp
        15.8M
        15.8M
        15.6M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946769
        21.7M
        21.4M
        98.8%
        21.1M
        97.1%
        0.4M
        198.0bp
        197.0bp
        15.7M
        15.7M
        15.6M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946770
        22.0M
        21.8M
        98.9%
        21.4M
        97.1%
        0.4M
        198.0bp
        197.0bp
        16.0M
        16.0M
        15.8M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946771
        28.1M
        27.8M
        98.8%
        27.0M
        96.0%
        0.8M
        197.0bp
        196.7bp
        20.4M
        20.4M
        20.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946772
        28.0M
        27.7M
        98.8%
        26.9M
        96.0%
        0.8M
        197.0bp
        196.6bp
        20.3M
        20.3M
        20.1M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946773
        28.4M
        28.0M
        98.8%
        27.2M
        96.0%
        0.8M
        197.0bp
        196.6bp
        20.6M
        20.5M
        20.3M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946774
        18.5M
        18.4M
        99.3%
        18.1M
        97.9%
        0.3M
        193.0bp
        193.4bp
        13.3M
        13.3M
        13.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946775
        18.7M
        18.6M
        99.3%
        18.2M
        97.5%
        0.3M
        193.0bp
        193.1bp
        13.6M
        13.6M
        13.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946776
        17.5M
        17.4M
        99.4%
        17.1M
        97.5%
        0.3M
        193.0bp
        193.3bp
        12.9M
        12.9M
        12.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946777
        14.2M
        14.1M
        99.3%
        13.9M
        97.6%
        0.2M
        193.0bp
        193.1bp
        10.3M
        10.3M
        10.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946778
        16.9M
        16.8M
        99.4%
        16.5M
        97.3%
        0.3M
        193.0bp
        193.2bp
        11.8M
        11.8M
        11.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946779
        14.9M
        14.8M
        99.3%
        14.6M
        97.5%
        0.3M
        193.0bp
        193.1bp
        10.1M
        10.1M
        10.0M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946780
        22.5M
        22.4M
        99.4%
        21.9M
        97.5%
        0.4M
        193.0bp
        192.8bp
        15.2M
        15.2M
        15.0M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946781
        15.0M
        14.9M
        99.4%
        14.6M
        97.6%
        0.3M
        193.0bp
        193.2bp
        10.5M
        10.5M
        10.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946782
        15.3M
        15.1M
        99.3%
        14.9M
        97.6%
        0.3M
        193.0bp
        193.5bp
        11.0M
        11.0M
        10.9M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946783
        15.5M
        15.4M
        99.4%
        14.9M
        96.3%
        0.5M
        194.0bp
        194.3bp
        10.7M
        10.7M
        10.6M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946784
        16.5M
        16.3M
        99.1%
        16.1M
        97.7%
        0.2M
        194.0bp
        194.3bp
        11.6M
        11.6M
        11.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946785
        17.5M
        17.3M
        98.9%
        17.1M
        97.4%
        0.3M
        200.0bp
        200.0bp
        12.5M
        12.5M
        12.3M
        0.1M
        0.0M
        0.0M
        0.3%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946786
        15.6M
        15.5M
        99.3%
        15.3M
        98.0%
        0.2M
        194.0bp
        194.3bp
        10.6M
        10.6M
        10.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946787
        17.6M
        17.4M
        99.1%
        17.0M
        96.9%
        0.4M
        194.0bp
        194.2bp
        11.9M
        11.9M
        11.8M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946788
        19.0M
        18.9M
        99.4%
        18.2M
        95.6%
        0.7M
        194.0bp
        194.1bp
        12.5M
        12.5M
        12.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946789
        16.8M
        16.6M
        99.2%
        16.2M
        96.8%
        0.4M
        194.0bp
        194.2bp
        11.5M
        11.5M
        11.3M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946790
        23.6M
        23.4M
        99.1%
        22.9M
        97.1%
        0.5M
        194.0bp
        194.1bp
        16.5M
        16.5M
        16.4M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946791
        21.7M
        21.5M
        99.4%
        21.2M
        98.0%
        0.3M
        192.0bp
        191.9bp
        15.4M
        15.4M
        15.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946792
        16.9M
        16.8M
        99.2%
        16.6M
        97.8%
        0.3M
        191.0bp
        191.4bp
        11.9M
        11.9M
        11.8M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946793
        17.6M
        17.4M
        99.3%
        17.2M
        97.7%
        0.3M
        191.0bp
        191.6bp
        12.4M
        12.4M
        12.3M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946794
        19.9M
        19.8M
        99.3%
        19.5M
        97.8%
        0.3M
        191.0bp
        191.3bp
        14.3M
        14.3M
        14.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946795
        17.5M
        17.3M
        99.3%
        17.1M
        97.7%
        0.3M
        191.0bp
        191.5bp
        12.1M
        12.1M
        11.9M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946796
        20.2M
        20.1M
        99.3%
        19.8M
        97.7%
        0.3M
        191.0bp
        191.6bp
        14.0M
        14.0M
        13.8M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946797
        23.0M
        22.8M
        99.2%
        22.4M
        97.5%
        0.4M
        191.0bp
        191.2bp
        16.0M
        16.0M
        15.8M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946798
        20.3M
        20.1M
        99.3%
        19.8M
        97.8%
        0.3M
        191.0bp
        191.3bp
        14.4M
        14.4M
        14.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946799
        19.8M
        19.7M
        99.3%
        19.4M
        97.8%
        0.3M
        192.0bp
        191.7bp
        13.7M
        13.7M
        13.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946800
        20.0M
        19.8M
        98.9%
        19.4M
        97.1%
        0.3M
        188.0bp
        188.3bp
        14.4M
        14.4M
        14.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946801
        19.1M
        18.9M
        98.9%
        18.6M
        97.0%
        0.4M
        188.0bp
        188.4bp
        13.8M
        13.8M
        13.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946802
        16.3M
        16.1M
        98.8%
        15.8M
        97.0%
        0.3M
        188.0bp
        188.0bp
        11.8M
        11.8M
        11.7M
        0.1M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946803
        17.3M
        17.1M
        98.9%
        16.8M
        97.2%
        0.3M
        188.0bp
        188.4bp
        12.5M
        12.4M
        12.3M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946804
        17.8M
        17.7M
        99.1%
        17.3M
        97.2%
        0.3M
        188.0bp
        188.0bp
        12.4M
        12.4M
        12.3M
        0.1M
        0.0M
        0.0M
        0.2%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946805
        18.8M
        18.7M
        99.0%
        18.3M
        97.0%
        0.4M
        188.0bp
        188.4bp
        12.8M
        12.8M
        12.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946806
        15.9M
        15.7M
        99.1%
        15.4M
        97.2%
        0.3M
        188.0bp
        188.0bp
        10.8M
        10.8M
        10.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946807
        18.7M
        18.5M
        99.1%
        18.2M
        97.2%
        0.4M
        188.0bp
        188.5bp
        13.0M
        13.0M
        12.9M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946808
        17.3M
        17.1M
        99.0%
        16.8M
        97.3%
        0.3M
        188.0bp
        188.0bp
        12.5M
        12.5M
        12.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946809
        22.2M
        22.0M
        99.2%
        21.6M
        97.5%
        0.4M
        192.0bp
        192.0bp
        15.9M
        15.9M
        15.7M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946810
        19.2M
        19.0M
        99.0%
        18.6M
        97.3%
        0.3M
        192.0bp
        192.0bp
        13.6M
        13.6M
        13.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946811
        18.9M
        18.8M
        99.2%
        18.5M
        97.6%
        0.3M
        192.0bp
        192.1bp
        13.4M
        13.4M
        13.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946812
        21.0M
        20.8M
        99.0%
        20.5M
        97.5%
        0.3M
        192.0bp
        191.8bp
        14.6M
        14.6M
        14.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946813
        18.9M
        18.8M
        99.2%
        18.5M
        97.5%
        0.3M
        192.0bp
        192.0bp
        13.2M
        13.2M
        13.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946814
        21.1M
        20.9M
        98.9%
        20.6M
        97.5%
        0.3M
        192.0bp
        191.9bp
        15.1M
        15.0M
        14.9M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946815
        24.7M
        24.5M
        99.0%
        24.1M
        97.5%
        0.4M
        191.0bp
        191.5bp
        17.6M
        17.6M
        17.4M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946816
        19.5M
        19.3M
        99.0%
        19.0M
        97.5%
        0.3M
        192.0bp
        191.6bp
        14.0M
        14.0M
        13.8M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946817
        17.2M
        17.1M
        99.1%
        16.8M
        97.4%
        0.3M
        194.0bp
        193.9bp
        12.8M
        12.8M
        12.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946818
        17.1M
        16.9M
        99.0%
        16.6M
        97.3%
        0.3M
        194.0bp
        193.7bp
        12.6M
        12.6M
        12.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946819
        19.4M
        19.2M
        99.0%
        18.9M
        97.2%
        0.3M
        194.0bp
        193.6bp
        14.2M
        14.2M
        14.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946820
        20.1M
        19.9M
        98.8%
        19.5M
        97.0%
        0.3M
        194.0bp
        193.8bp
        14.9M
        14.9M
        14.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946821
        19.3M
        19.1M
        98.9%
        18.8M
        97.2%
        0.3M
        194.0bp
        193.9bp
        14.2M
        14.2M
        14.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946822
        21.6M
        21.4M
        99.2%
        21.0M
        97.3%
        0.4M
        194.0bp
        193.9bp
        15.9M
        15.9M
        15.8M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946823
        23.4M
        23.2M
        98.9%
        22.8M
        97.1%
        0.4M
        194.0bp
        193.9bp
        17.3M
        17.3M
        17.1M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946824
        19.8M
        19.5M
        98.9%
        19.2M
        97.0%
        0.4M
        194.0bp
        193.7bp
        14.4M
        14.4M
        14.3M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946825
        17.9M
        17.7M
        99.0%
        17.4M
        97.3%
        0.3M
        194.0bp
        193.9bp
        13.2M
        13.2M
        13.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946826
        20.3M
        20.1M
        99.1%
        19.8M
        97.4%
        0.3M
        194.0bp
        194.2bp
        15.1M
        15.1M
        15.0M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946827
        18.3M
        18.1M
        99.0%
        17.8M
        97.2%
        0.3M
        194.0bp
        194.1bp
        13.6M
        13.6M
        13.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946828
        20.0M
        19.8M
        99.1%
        19.5M
        97.2%
        0.4M
        194.0bp
        194.1bp
        15.0M
        15.0M
        14.9M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946829
        20.6M
        20.4M
        99.1%
        20.0M
        97.3%
        0.4M
        194.0bp
        193.9bp
        15.4M
        15.4M
        15.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946830
        22.3M
        22.1M
        99.1%
        21.6M
        97.2%
        0.4M
        194.0bp
        194.0bp
        16.0M
        16.0M
        15.8M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946831
        20.3M
        20.1M
        99.0%
        19.7M
        97.0%
        0.4M
        194.0bp
        193.9bp
        14.1M
        14.1M
        14.0M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946832
        19.8M
        19.6M
        99.0%
        19.2M
        97.1%
        0.4M
        194.0bp
        193.7bp
        13.8M
        13.8M
        13.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946833
        17.6M
        17.5M
        99.1%
        17.2M
        97.3%
        0.3M
        194.0bp
        193.7bp
        12.6M
        12.6M
        12.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946834
        16.8M
        16.6M
        99.1%
        16.3M
        97.5%
        0.3M
        194.0bp
        194.0bp
        12.5M
        12.5M
        12.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946835
        20.3M
        20.1M
        99.0%
        19.7M
        97.3%
        0.3M
        192.0bp
        192.0bp
        14.3M
        14.3M
        14.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946836
        24.3M
        24.1M
        99.3%
        23.7M
        97.6%
        0.4M
        193.0bp
        192.7bp
        17.2M
        17.2M
        17.0M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946837
        22.7M
        22.5M
        99.3%
        22.2M
        97.8%
        0.4M
        192.0bp
        192.5bp
        16.0M
        16.0M
        15.8M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946838
        25.3M
        25.0M
        99.0%
        24.6M
        97.5%
        0.4M
        192.0bp
        192.3bp
        17.7M
        17.7M
        17.5M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946839
        23.3M
        23.1M
        99.0%
        22.7M
        97.3%
        0.4M
        192.0bp
        192.4bp
        16.5M
        16.5M
        16.4M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946840
        22.5M
        22.3M
        98.9%
        21.9M
        97.3%
        0.4M
        192.0bp
        192.2bp
        16.0M
        16.0M
        15.8M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946841
        20.5M
        20.3M
        99.1%
        20.0M
        97.6%
        0.3M
        192.0bp
        192.3bp
        14.8M
        14.8M
        14.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946842
        20.2M
        20.0M
        99.1%
        19.7M
        97.6%
        0.3M
        192.0bp
        192.4bp
        14.7M
        14.6M
        14.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946843
        20.8M
        20.6M
        99.2%
        20.3M
        97.8%
        0.3M
        197.0bp
        197.3bp
        15.1M
        15.1M
        15.0M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946844
        20.1M
        20.0M
        99.2%
        19.6M
        97.4%
        0.4M
        197.0bp
        197.2bp
        14.9M
        14.9M
        14.7M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946845
        19.6M
        19.5M
        99.3%
        19.1M
        97.4%
        0.4M
        197.0bp
        197.3bp
        14.7M
        14.7M
        14.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946846
        16.2M
        16.1M
        99.2%
        15.8M
        97.5%
        0.3M
        197.0bp
        197.2bp
        11.9M
        11.9M
        11.8M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946847
        19.2M
        19.1M
        99.3%
        18.7M
        97.3%
        0.4M
        197.0bp
        197.2bp
        13.7M
        13.7M
        13.5M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946848
        17.0M
        16.9M
        99.2%
        16.6M
        97.4%
        0.3M
        197.0bp
        197.2bp
        11.7M
        11.7M
        11.6M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946849
        25.5M
        25.3M
        99.3%
        24.8M
        97.3%
        0.5M
        197.0bp
        197.1bp
        17.4M
        17.4M
        17.3M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946850
        17.2M
        17.1M
        99.3%
        16.8M
        97.4%
        0.3M
        197.0bp
        197.3bp
        12.3M
        12.3M
        12.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946851
        17.2M
        17.0M
        99.2%
        16.7M
        97.5%
        0.3M
        197.0bp
        197.4bp
        12.6M
        12.6M
        12.4M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946852
        17.6M
        17.5M
        99.3%
        16.9M
        96.1%
        0.6M
        198.0bp
        197.7bp
        12.3M
        12.3M
        12.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946853
        18.6M
        18.4M
        99.0%
        18.2M
        97.6%
        0.3M
        198.0bp
        197.5bp
        13.3M
        13.3M
        13.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.2bp
        ERX1946854
        20.0M
        19.8M
        99.2%
        19.5M
        97.7%
        0.3M
        198.0bp
        197.6bp
        14.2M
        14.2M
        14.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946855
        17.8M
        17.7M
        99.2%
        17.4M
        97.9%
        0.2M
        198.0bp
        197.7bp
        12.3M
        12.3M
        12.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946856
        20.5M
        20.3M
        99.0%
        19.8M
        96.8%
        0.5M
        198.0bp
        197.5bp
        14.0M
        14.0M
        13.9M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946857
        21.5M
        21.3M
        99.3%
        20.5M
        95.5%
        0.8M
        198.0bp
        197.6bp
        14.3M
        14.3M
        14.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946858
        19.2M
        19.0M
        99.2%
        18.5M
        96.7%
        0.5M
        198.0bp
        197.6bp
        13.2M
        13.2M
        13.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946859
        27.4M
        27.1M
        99.0%
        26.5M
        96.9%
        0.6M
        198.0bp
        197.5bp
        19.4M
        19.4M
        19.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946860
        22.3M
        22.2M
        99.3%
        21.9M
        98.0%
        0.3M
        197.0bp
        196.9bp
        16.2M
        16.2M
        16.0M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946861
        17.3M
        17.2M
        99.2%
        16.9M
        97.7%
        0.3M
        197.0bp
        196.7bp
        12.4M
        12.4M
        12.3M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946862
        18.1M
        17.9M
        99.2%
        17.6M
        97.7%
        0.3M
        197.0bp
        196.8bp
        13.0M
        13.0M
        12.9M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946863
        20.6M
        20.5M
        99.2%
        20.2M
        97.7%
        0.3M
        197.0bp
        196.7bp
        15.1M
        15.1M
        15.0M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946864
        18.1M
        17.9M
        99.2%
        17.6M
        97.6%
        0.3M
        197.0bp
        196.8bp
        12.7M
        12.7M
        12.6M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946865
        20.8M
        20.7M
        99.2%
        20.3M
        97.6%
        0.3M
        197.0bp
        196.8bp
        14.7M
        14.7M
        14.5M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946866
        23.4M
        23.3M
        99.2%
        22.8M
        97.4%
        0.4M
        197.0bp
        196.6bp
        16.7M
        16.7M
        16.5M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946867
        20.8M
        20.6M
        99.2%
        20.3M
        97.7%
        0.3M
        197.0bp
        196.7bp
        15.0M
        15.0M
        14.9M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946868
        20.4M
        20.3M
        99.2%
        20.0M
        97.7%
        0.3M
        197.0bp
        196.9bp
        14.4M
        14.4M
        14.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946869
        22.0M
        21.7M
        98.8%
        21.3M
        97.1%
        0.4M
        196.0bp
        195.9bp
        16.4M
        16.3M
        16.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946870
        21.0M
        20.7M
        98.9%
        20.3M
        97.0%
        0.4M
        196.0bp
        195.9bp
        15.7M
        15.7M
        15.5M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946871
        17.8M
        17.6M
        98.8%
        17.3M
        97.0%
        0.3M
        196.0bp
        195.8bp
        13.4M
        13.4M
        13.3M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946872
        19.1M
        18.9M
        98.9%
        18.6M
        97.1%
        0.3M
        196.0bp
        195.9bp
        14.3M
        14.3M
        14.1M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946873
        20.2M
        20.0M
        99.1%
        19.6M
        97.2%
        0.4M
        196.0bp
        195.9bp
        14.6M
        14.6M
        14.4M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946874
        20.6M
        20.4M
        99.0%
        20.0M
        97.0%
        0.4M
        196.0bp
        196.0bp
        14.5M
        14.5M
        14.3M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946875
        17.7M
        17.5M
        99.1%
        17.2M
        97.2%
        0.3M
        196.0bp
        195.9bp
        12.5M
        12.5M
        12.3M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946876
        21.4M
        21.2M
        99.0%
        20.8M
        97.1%
        0.4M
        196.0bp
        196.1bp
        15.4M
        15.4M
        15.3M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946877
        19.6M
        19.3M
        98.9%
        19.0M
        97.2%
        0.3M
        196.0bp
        195.8bp
        14.7M
        14.7M
        14.5M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946878
        24.6M
        24.4M
        99.1%
        23.9M
        97.3%
        0.4M
        197.0bp
        196.8bp
        18.0M
        18.0M
        17.8M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946879
        20.2M
        20.0M
        98.9%
        19.7M
        97.2%
        0.3M
        197.0bp
        196.8bp
        14.7M
        14.7M
        14.5M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946880
        21.0M
        20.8M
        99.1%
        20.4M
        97.6%
        0.3M
        197.0bp
        196.8bp
        15.1M
        15.1M
        14.9M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946881
        23.6M
        23.3M
        98.9%
        23.0M
        97.4%
        0.4M
        197.0bp
        196.6bp
        16.8M
        16.8M
        16.6M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946882
        21.3M
        21.1M
        99.2%
        20.7M
        97.4%
        0.4M
        197.0bp
        196.8bp
        15.2M
        15.2M
        15.0M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946883
        23.9M
        23.7M
        98.9%
        23.3M
        97.4%
        0.4M
        197.0bp
        196.7bp
        17.4M
        17.4M
        17.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946884
        27.6M
        27.3M
        99.0%
        26.9M
        97.4%
        0.4M
        197.0bp
        196.5bp
        20.1M
        20.1M
        19.9M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946885
        21.8M
        21.6M
        99.0%
        21.3M
        97.4%
        0.3M
        197.0bp
        196.6bp
        16.0M
        16.0M
        15.8M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946886
        17.7M
        17.6M
        99.0%
        17.3M
        97.3%
        0.3M
        197.0bp
        197.3bp
        13.4M
        13.4M
        13.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946887
        17.8M
        17.6M
        98.9%
        17.3M
        97.3%
        0.3M
        197.0bp
        197.2bp
        13.3M
        13.2M
        13.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946888
        20.3M
        20.1M
        98.9%
        19.8M
        97.2%
        0.3M
        197.0bp
        197.1bp
        15.1M
        15.1M
        15.0M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946889
        21.3M
        21.0M
        98.7%
        20.7M
        97.0%
        0.4M
        197.0bp
        197.2bp
        16.0M
        15.9M
        15.8M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946890
        20.1M
        19.8M
        98.8%
        19.5M
        97.1%
        0.3M
        197.0bp
        197.3bp
        15.0M
        15.0M
        14.8M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946891
        22.3M
        22.1M
        99.1%
        21.7M
        97.2%
        0.4M
        197.0bp
        197.4bp
        16.6M
        16.6M
        16.5M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946892
        24.5M
        24.2M
        98.8%
        23.8M
        97.0%
        0.4M
        197.0bp
        197.3bp
        18.3M
        18.3M
        18.1M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946893
        20.6M
        20.4M
        98.8%
        19.9M
        96.8%
        0.4M
        197.0bp
        197.2bp
        15.2M
        15.2M
        15.1M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946894
        18.5M
        18.3M
        99.0%
        18.0M
        97.2%
        0.3M
        197.0bp
        197.3bp
        13.9M
        13.9M
        13.7M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946895
        21.4M
        21.2M
        99.0%
        20.8M
        97.3%
        0.4M
        198.0bp
        197.5bp
        16.1M
        16.1M
        15.9M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946896
        19.0M
        18.8M
        98.9%
        18.4M
        97.1%
        0.3M
        197.0bp
        197.4bp
        14.3M
        14.3M
        14.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946897
        21.0M
        20.8M
        99.0%
        20.4M
        97.1%
        0.4M
        197.0bp
        197.4bp
        15.9M
        15.9M
        15.7M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946898
        21.7M
        21.5M
        99.0%
        21.1M
        97.2%
        0.4M
        197.0bp
        197.4bp
        16.4M
        16.4M
        16.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946899
        23.5M
        23.2M
        99.0%
        22.7M
        97.0%
        0.5M
        197.0bp
        197.4bp
        17.1M
        17.0M
        16.9M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946900
        21.4M
        21.1M
        98.9%
        20.7M
        96.9%
        0.4M
        197.0bp
        197.4bp
        15.1M
        15.1M
        14.9M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946901
        20.6M
        20.4M
        98.9%
        20.0M
        97.0%
        0.4M
        197.0bp
        197.3bp
        14.6M
        14.6M
        14.4M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946902
        18.4M
        18.3M
        99.0%
        17.9M
        97.2%
        0.3M
        197.0bp
        197.3bp
        13.4M
        13.4M
        13.2M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946903
        17.6M
        17.4M
        99.0%
        17.1M
        97.4%
        0.3M
        197.0bp
        197.4bp
        13.3M
        13.3M
        13.1M
        0.1M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946904
        21.8M
        21.5M
        98.9%
        21.2M
        97.2%
        0.4M
        196.0bp
        196.4bp
        15.6M
        15.6M
        15.4M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946905
        26.2M
        26.0M
        99.2%
        25.6M
        97.5%
        0.5M
        197.0bp
        196.9bp
        18.8M
        18.8M
        18.6M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946906
        24.7M
        24.6M
        99.3%
        24.2M
        97.7%
        0.4M
        197.0bp
        196.7bp
        17.8M
        17.8M
        17.6M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946907
        27.5M
        27.2M
        99.0%
        26.7M
        97.4%
        0.4M
        197.0bp
        196.6bp
        19.6M
        19.5M
        19.3M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946908
        26.1M
        25.8M
        99.0%
        25.4M
        97.2%
        0.5M
        197.0bp
        196.7bp
        18.8M
        18.8M
        18.6M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946909
        24.1M
        23.8M
        98.9%
        23.4M
        97.2%
        0.4M
        197.0bp
        196.5bp
        17.4M
        17.4M
        17.2M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946910
        22.2M
        22.0M
        99.1%
        21.7M
        97.6%
        0.3M
        197.0bp
        196.6bp
        16.3M
        16.3M
        16.1M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp
        ERX1946911
        22.5M
        22.3M
        99.0%
        21.9M
        97.5%
        0.3M
        197.0bp
        196.7bp
        16.5M
        16.5M
        16.3M
        0.2M
        0.0M
        0.0M
        0.1%
        0.0%
        1.4bp
        0.0%
        1.1bp

        Alignment Scores

        Created with MultiQC

        Sample relationships

        Plots interrogating sample relationships, based on final count matrices.

        STAR_SALMON DESeq2 sample similarity

        Created with MultiQC

        STAR_SALMON DESeq2 PCA plot

        Created with MultiQC

        Biotype Counts

        Biotype Counts shows reads overlapping genomic features of different biotypes, counted by featureCounts.

        Created with MultiQC

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        GroupSoftwareVersion
        BEDTOOLS_GENOMECOV_FWbedtools2.31.1
        CUSTOM_GETCHROMSIZESgetchromsizes1.21
        CUSTOM_TX2GENEpython3.10.4
        DESEQ2_QC_STAR_SALMONbioconductor-deseq21.28.0
        r-base4.0.3
        DupRadarbioconductor-dupradar1.32.0
        FASTQCfastqc0.12.1
        FQ_LINTfq0.12.0 (2024-07-08)
        FQ_SUBSAMPLEfq0.12.0 (2024-07-08)
        GTF2BEDperl5.26.2
        GTF_FILTERpython3.9.5
        GUNZIP_FASTAgunzip1.1
        GUNZIP_GTFgunzip1.1
        MAKE_TRANSCRIPTS_FASTArsem1.3.1
        star2.7.10a
        MULTIQC_CUSTOM_BIOTYPEpython3.9.5
        PICARD_MARKDUPLICATESpicard3.1.1
        QUALIMAP_RNASEQqualimap2.3
        RSEQC_BAMSTATrseqc5.0.2
        RSEQC_INFEREXPERIMENTrseqc5.0.2
        RSEQC_INNERDISTANCErseqc5.0.2
        RSEQC_JUNCTIONANNOTATIONrseqc5.0.2
        RSEQC_JUNCTIONSATURATIONrseqc5.0.2
        RSEQC_READDISTRIBUTIONrseqc5.0.2
        RSEQC_READDUPLICATIONrseqc5.0.2
        SALMON_INDEXsalmon1.10.3
        SALMON_QUANTsalmon1.10.3
        SAMTOOLS_FLAGSTATsamtools1.21
        SAMTOOLS_IDXSTATSsamtools1.21
        SAMTOOLS_INDEXsamtools1.21
        SAMTOOLS_SORTsamtools1.21
        SAMTOOLS_STATSsamtools1.21
        SE_GENEbioconductor-summarizedexperiment1.32.0
        STAR_ALIGNgawk5.1.0
        samtools1.21
        star2.7.11b
        STAR_GENOMEGENERATEgawk5.1.0
        samtools1.21
        star2.7.11b
        STRINGTIE_STRINGTIEstringtie2.2.3
        SUBREAD_FEATURECOUNTSsubread2.0.6
        TRIMGALOREcutadapt4.9
        trimgalore0.6.10
        TXIMETA_TXIMPORTbioconductor-tximeta1.20.1
        UCSC_BEDCLIPucsc377
        UCSC_BEDGRAPHTOBIGWIGucsc469
        WorkflowNextflow24.10.1
        nf-core/rnaseqv3.18.0-gb96a753

        nf-core/rnaseq Methods Description

        Suggested text and references to use when describing pipeline usage within the methods section of a publication.URL: https://github.com/nf-core/rnaseq

        Methods

        Data was processed using nf-core/rnaseq v3.18.0 (doi: 10.5281/zenodo.1400710) of the nf-core collection of workflows (Ewels et al., 2020), utilising reproducible software environments from the Bioconda (Grüning et al., 2018) and Biocontainers (da Veiga Leprevost et al., 2017) projects.

        The pipeline was executed with Nextflow v24.10.1 (Di Tommaso et al., 2017) with the following command:

        nextflow run nf-core/rnaseq --input /work/hartmaca/calixto/samplesheet_rnaseq.csv --outdir /work/hartmaca/calixto --fasta /data/laub-rna/hiwi/cajus/arabid_genome/Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.gz --gtf /data/laub-rna/hiwi/cajus/arabid_genome/Arabidopsis_thaliana.TAIR10.60.gtf.gz -profile singularity

        References

        • Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., & Notredame, C. (2017). Nextflow enables reproducible computational workflows. Nature Biotechnology, 35(4), 316-319. doi: 10.1038/nbt.3820
        • Ewels, P. A., Peltzer, A., Fillinger, S., Patel, H., Alneberg, J., Wilm, A., Garcia, M. U., Di Tommaso, P., & Nahnsen, S. (2020). The nf-core framework for community-curated bioinformatics pipelines. Nature Biotechnology, 38(3), 276-278. doi: 10.1038/s41587-020-0439-x
        • Grüning, B., Dale, R., Sjödin, A., Chapman, B. A., Rowe, J., Tomkins-Tinch, C. H., Valieris, R., Köster, J., & Bioconda Team. (2018). Bioconda: sustainable and comprehensive software distribution for the life sciences. Nature Methods, 15(7), 475–476. doi: 10.1038/s41592-018-0046-7
        • da Veiga Leprevost, F., Grüning, B. A., Alves Aflitos, S., Röst, H. L., Uszkoreit, J., Barsnes, H., Vaudel, M., Moreno, P., Gatto, L., Weber, J., Bai, M., Jimenez, R. C., Sachsenberg, T., Pfeuffer, J., Vera Alvarez, R., Griss, J., Nesvizhskii, A. I., & Perez-Riverol, Y. (2017). BioContainers: an open-source and community-driven framework for software standardization. Bioinformatics (Oxford, England), 33(16), 2580–2582. doi: 10.1093/bioinformatics/btx192
        Notes:
        • The command above does not include parameters contained in any configs or profiles that may have been used. Ensure the config file is also uploaded with your publication!
        • You should also cite all software used within this run. Check the "Software Versions" of this report to get version information.

        nf-core/rnaseq Workflow Summary

        - this information is collected when the pipeline is started.URL: https://github.com/nf-core/rnaseq

        Input/output options

        input
        /work/hartmaca/calixto/samplesheet_rnaseq.csv
        outdir
        /work/hartmaca/calixto

        Reference genome options

        fasta
        /data/laub-rna/hiwi/cajus/arabid_genome/Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.gz
        gtf
        /data/laub-rna/hiwi/cajus/arabid_genome/Arabidopsis_thaliana.TAIR10.60.gtf.gz

        Core Nextflow options

        configFiles
        N/A
        containerEngine
        singularity
        launchDir
        /gpfs1/work/hartmaca/calixto
        profile
        singularity
        projectDir
        /home/hartmaca/.nextflow/assets/nf-core/rnaseq
        revision
        master
        runName
        nasty_jang
        userName
        hartmaca
        workDir
        /gpfs1/work/hartmaca/calixto/work